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Institution	Date	Title	Author
國立臺灣海洋大學	2010-07	Update Management of Data-Driven Bioinformatics Softwares: A Case Study of GOSH System	Tsan-Huang Shih;Chien-Ming Chen;Jhen-Li Huang;Tun-Wen Pai
國立臺灣海洋大學	2010-02	Feature-incorporated alignment based ligand-binding residue prediction for carbohydrate-binding modules	Wei-Yao Chou;Wei-I Chou;Tun-Wen Pai;Shu-Chuan Lin;Ting-Ying Jiang;Chuan-Yi Tang;Margaret Dah-Tsyr Chang
國立臺灣海洋大學	2010-02	Prediction of Regulatory Molecules for Enhancement of EGFR Overexpression Triggered by Signal Peptide of Ribonuclease 3	Hao-Teng Chang;Chung-Hsiao Chao;Yu-Fong Lin;Louis J. Tseng;Tun-Wen Pai;Tsan-Huang Shih;Margaret Dah-Tsyr Chang;Pei-Wen Tsai
國立臺灣海洋大學	2010	A comprehensive system for identifying internal repeat substructures of proteins	Hua-Ying Kao;Tsang-Huang Shih;Tun-Wen Pai;Ming-Da Lu;Hui-Huang Hsu
國立臺灣海洋大學	2010	Multiple Structure Alignment Based on Geometrical Correlation of Secondary Structure Elements	TUN-WEN PAI;RUEI-HSIANG CHANG;CHIEN-MING CHEN;PO-HAN SU;LEE-JYI WANG;KUEN-TSAIR LAY;KUO-TORNG LAN
國立臺灣海洋大學	2010	Detection and Alignment of 3D Domain Swapping Proteins Using Angle-distance Image-based Secondary Structural Matching Techniques	Chia-Han Chu;Wei-Cheng Lo;Hsin-Wei Wang;Yen-Chu Hsu;Jenn-Kang Hwang;Ping-Chiang Lyu;Tun-Wen Pai;Chuan Yi Tang
國立臺灣海洋大學	2010	System Integration of Heterogeneous Bioinformatics Databases for Identifying Orthologous SSRs of Disease Genes	Wei-Heng Tai;Ching-Han Yang;Chien-Ming Chen;Tun-Wen Pai
國立臺灣海洋大學	2009-09	Prediction of Conformational Epitopes by Geometrical Affinity and Chemical Propensity Approaches	Cheng-Ying Tang;Wei-Kuo Wu;Yu-Ping Hsu;Hsin-Wei Wang;Tun-Wen Pai;Hao-Teng Chang
中國醫藥大學	2009-03-16	B-Cell Conformational Epitope Prediction based on Structural Relationship and Antigenic Characteristics	(Wei-Kuo Wu); (Wei-Chun Chung); 張顥騰(Hao-Teng Chang); (Ron-shan Cheng); (Tun-Wen Pai)*; (Wei-Kuo Wu)
國立臺灣海洋大學	2009	B-Cell Conformational Epitope Prediction based on Structural Relationship and Antigenic Characteristics	Wei-Kuo Wu;Wei-Chun Chung;Hao-Teng Chang;Ron-shan Cheng;Tun-Wen Pai
國立臺灣海洋大學	2009	An online conserved SSR discovery through cross-species comparison	Tun-Wen Pai;Chien-Ming Chen;Meng-Chang Hsiao;Ronshan Cheng;Wen-Shyong Tzou;Chin-Hua Hu
國立臺灣海洋大學	2009	A Database of Selected Marine Genomics for Retrieving Distantly Related Proteins	Tsan-Huang Shih;Yen-Chu Hsu;Tun-Wen Pai;Wen-Shyong Tzou;Chin-Hua Hu
國立臺灣海洋大學	2009	Discover Significant Associations of Orthologous Simple Sequence Repeat Patterns with Gene Ontology Terms	Chien-Ming Chen;Chia-Sheng Chuang;Zhen-Li Huang;Tun-Wen Pai
國立臺灣海洋大學	2009	Cross-species Comparison for Identifying Orthologous Simple Sequence Repeats of Disease Genes	Chih-Chia Chen;Tsan-Huang Shih;Chien-Ming Chen;Chin-Hua Hu;Wen-Shyong Tzou;Tun-Wen Pai
國立臺灣海洋大學	2009	Curvature and Geodesic Fan Features for Protein Surface Comparison	Liang-Cheng Chang;Yueh-Lin Tsai;Cheng-Ying Tang;Tun-Wen Pai
國立臺灣海洋大學	2009	Length Encoded Secondary Structure Profile for Remote Homologous Protein Detection	Yen-Chu Hsu;Chien-Ming Chen;Tun-Wen Pai;Jyh-Fu Jeng;Chin-Hua Hu;Wen-Shyong Tzou
國立臺灣海洋大學	2009	Linear Epitope Prediction Using Statistics of Amino Acid Segments and SVM	Ya-Chi Lin;Hsin-Wei Wang;Wei-Kuo Wu;Tun-Wen Pai
國立臺灣海洋大學	2009	Exponential Smoothing Forecasting Models for Fishery Statistics	Hsin-Wei Wang;Tun-Wen Pai;Chia-Han Chu
國立臺灣海洋大學	2009	IRIS: Internal Repeat Identification System	Hua-Ying Kao;Wen-Shyong Tzou;Yen-Chu Hsu;Chien-Ming Chen;Tun-Wen Pai
國立臺灣海洋大學	2009	Identification of Conserved Simple Sequence Repeats from Orthologous Disease Genes	Chien-Ming Chen;Wen-Shyong Tzou;Tsan-Huang Shih;Chih-Chia Chen;Chin-Hua Hu;Tun-Wen Pai
國立臺灣海洋大學	2009	The Potent Chinese Herbs for Inhibiting Cytotoxicity of Eosinophil Cationic Protein	Louis J. Tseng;Blacky T. Kao;Wei-Yong Lin;Margaret Dah-Tsyr Chang;Tun-Wen Pai;Ying-Chen Huang;Hao-Teng Chang
國立臺灣海洋大學	2009	An online conserved SSR discovery through cross-species comparison	Tun-Wen Pai;Chien-Ming Chen;Meng-Chang Hsiao;Ronshan Cheng;Wen-Shyong Tzou;Chin-Hua Hu
國立臺灣海洋大學	2008-11	Angle-Distance Image Matching Techniques for Protein Structure Comparison	Chia-Han Chu;Chuan Yi Tang;Cheng-Yin Tang;Tun-Wen Pai
國立臺灣海洋大學	2008-11	Estimation and extraction of B-cell linear epitopes predicted by mathematical morphology approache	Hao-Teng Chang;Chih-Hong Liu;Tun-Wen Pai
國立臺灣海洋大學	2008-03	An SSR Comparative Genomics Database and Its Applications	Tun-Wen Pai;Meng-Chang Hsiao;Chien-Ming Chen;Wen-Shyong Tzou;Ron-Shan Chen
國立臺灣海洋大學	2008-01	CG-SSR: an online comparative genomics database for SSR discovery	Meng-Chang Hsiao;Tzu-Ying Hsiao;Chien-Ming Chen;Hua-Ying Kao;Tun-Wen Pai;Ron-Shan Chen
國立臺灣海洋大學	2008-01	Estimation and extraction of predictive linear epitopes by mathematical morphology approaches	Hao-Tan Chang;Chih-Hong Liu;Dah-Tsyr Chang;Tun-Wen Pai
國立臺灣海洋大學	2008	Multiple Sequence Alignment for Functional Correlation among Low Similarity Sequences	Wei-Yao Chou;Wei-I Chou;Tun-Wen Pai;Shu-Chuan Lin;Fan-Yu Chang;Yuh-Ju Sun;Chuan-Yi Tang;Margaret Dah-Tsyr Chang
國立臺灣海洋大學	2008	A Study of Microsatellites Dominating Mammalian Size Variation	Meng-Chang Hsiao;Chien-Ming Chen;Tun-Wen Pai;Wen-Shyong Tzou;Ron-Shan Chen
國立臺灣海洋大學	2008	Conformational Epitope Prediction based on Geometrical Relationship and Antigenic Characteristics	Szu-Wen Wang;Ya-Fang Liu;Ya-Chi Lin;Wei-Kuo Wu;Tun-Wen Pai
國立臺灣海洋大學	2008	Distance matrix analysis of mutual secondary structure pairs for multiple structure alignment	Chiang-Man Sun;Tun-Wen Pai;Jen-Chun Hung;Ying-Tsang Lo;Po-Hung Chen
國立臺灣海洋大學	2008	Detecting Conserved Primers of Orthologous SSRs through Comparative Genomics	Chia-Sheng Chuang;Hua-Ying Kao;Chien-Ming Chen;Tun-Wen Pai
國立臺灣海洋大學	2008	Development and evaluation of a sensitive enzyme-linked oligosorbent assay for detection of polymerase chain reaction amplified hepatitis C virus of genotypes 1 to 6	Rong-Yuan Huang;Hao-Teng Chang;Chung-Yu Lan;Tun-Wen Pai;Chao-Nan Wu;Chung-Mei Ling;Margaret Dah-Tsyr Chang
國立臺灣海洋大學	2008	Improved Effort-Moderated Item Response Model for E-learning Performance and Assessment	Cheng-Yin Tan;Tun-Wen Pai
國立臺灣海洋大學	2008	Identify SSR Regulators for Functional Gene Sets through Cross-Species Comparison	Chien-Ming Chen;Meng-Chang Hsiao;Tun-Wen Pai;Ronshan Cheng;Wen-Shyong Tzou;Margaret Dah-Tsyr Chang
國立臺灣海洋大學	2008	Iterative Refinement Techniques for Improving Constrained Feature based Multiple Structure Superposition	Tien-Yu Chen;Yen-Chu Hsu;Hsin-Wei Wang;Tun-Wen Pai
國立臺灣海洋大學	2008	Exponential Smoothing Forecasting Models for Fishery Statistics	Hsin-Wei Wang; Tun-Wen Pai; Chia-Han Chu
國立臺灣海洋大學	2007-07	DINKer: Digital Ink E-Learning Recorder	Hsin-Wei Wang;Cheng-Ying Tang;Yen-Sheng Chang;Jian-Hong Liu;Po-How Chang;Tun-Wen Pai
國立臺灣海洋大學	2007-07	Enhanced mutual Correlation of secondary structure elements for multiple structure alignment	Ruei-Hsiang Chang;Lee-Jyi Wang;Jian-Ming Chen;Tun-Wen Pai
國立臺灣海洋大學	2007-05	Ordered combinatorial feature selection: An information portal for multiple indexing sequence alignment	Hsin-Wei Wang;Jian-Ming Chen;Wei-Yao Chou; Margaret Dah-Tsyr Chang;Tun-Wen Pai
國立臺灣海洋大學	2007-01	Protein Hierarchical Selection : An Information Portal for Multiple Protein Structural Alignment	Tun-Wen Pai;Jian-Ming Chen;Bo-Han Su;Margaret Dah-Tsyr Chang;Hao-Teng Chang;Wei-I Chou
國立臺灣海洋大學	2007	Transcriptional regulation of human eosinophil RNases by an evolutionary- conserved sequence motif in primate genome	Hsiu-Yu Wang;Hao-Teng Chang;Tun-Wen Pai;Chung-I Wu;Yuan-Hung Lee;Yen-Hsin Chang;Hsiu-Ling Tai;Chuan-Yi Tang;Wei-Yao Chou;Margaret Dah-Tsyr Chang
國立臺灣海洋大學	2006-12	Identification of Unique Peptide Motifs as Linear epitopes with Pfam Domains and Families	Wei-Jun Zhung;Chih-Hong Liu;Tun-Wen Pai
國立臺灣海洋大學	2006-10	Constrained Multiple Strcutre Feature Alignment with Scop Hieraarchy Classification Database	Jain-Ming Chen;Po-Han Su;Tun-Wen Pai;Wen-Shyong Tzou
國立臺灣海洋大學	2006-10	Mutual Correlation of Secondary Structure Pairs for Protein Structure Alignment	Ruei-Hsiang Chang;Tun-Wen Pai;Wen-Shyong Tzou
國立臺灣海洋大學	2006-10	Prediction and Analysis of cis-Reglatory Elements of Genes Involved in the Development of Zebrafish	Chen-Yei Liu;Nai-Song Lin;Zhi-Kai Hsu;Chin-Hwa Hu;Tun-Wen Pai;Wen-Shyong Tzou
國立臺灣海洋大學	2006-09	Constrained Multiple Structure Feature Alignment with SCOP hierarchical classification database	Jian-Ming Chen;Po-Han Su;Tun-Wen Pai;Wen-Shyong Tzou
國立臺灣海洋大學	2006-07-01	REMUS: a tool for identification of unique peptide segments as epitopes	Tun-Wen Pai;Margaret Dah-Tsyr Chang;Wen-Shyong Tzou;Bo-Han Su;Pei-Chih Wu;Hao-Teng Chang;Wei-I Chou
國立臺灣海洋大學	2006-07	Multiple Indexing Sequence Alignment for Group Feature Identification	WEI-YAO CHOU;TUN-WEN PAI;JIM ZONE-CHANG LAI;WEN-SHYONG TZOU;MARGARET DAH-TSYR CHANG;HAO-TENG CHANG;WEI-YI CHOU;TAN-CHI FAN
國立中山大學	2006-04-25	Differential evolutionary conservation of motif modes in the yeast protein interaction network	Wei-Po Lee;Bing-Chiang Jeng;Tun-Wen Pai;Chin-Pei Tsai;Chang-Yung yu;Wen-Shyong Tzou

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